Submit Form (Search P)

This search mode is useful for predicting ligands that potentially bind to a structure of interest. Post a known protein structure in the PDB, and PoSSuM will search similar known-ligand binding sites for the query structure.

Submit a known PDB strucrture on the following form.
PDB ID(Required)
Sequence Redundancy

Cosine similarity cut-off
Aligned length cut-off
Max no. of hits to be displayd

Report Method

Note that known ligand-binding sites (e.g. HET, ATP, etc) on the submitted structure are excluded from search: only potential binding pockets will be searched as queries in this search mode.

Alternatively you can upload a structure (format: ".pdb" or ".ent" is available) of
interest by the following form.
PDB file

This search mode (uploading a structure) is in Beta Version 1.04 (still developing in progress). Search job is possibly be termintated in the middle.